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I did. I posted site.cfg an regarding numpy: Installing this was some |
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time ago. Its an scipy update making trouble. |
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|
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Regards Bastian |
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|
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|
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Am 15.06.2014 23:13, schrieb François Bissey: |
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> You obviously didn't read my last two emails. |
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> |
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> Francois |
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> |
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> On Sun, 15 Jun 2014 16:22:43 Bastian Löffler wrote: |
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>> I still have this problem when updating to scipy-0.14.0. Ideas? |
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>> |
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>> Am 09.06.2014 20:41, schrieb Bastian Löffler: |
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>>> Hi, |
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>>> |
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>>> this is |
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>>> |
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>>> /var/tmp/portage/sci-libs/scipy-0.14.0/work/scipy-0.14.0-python2_7/site.cf |
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>>> g: |
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>>> |
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>>> [blas] |
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>>> include_dirs = |
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>>> library_dirs = :/usr/lib64 |
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>>> blas_libs = |
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>>> [lapack] |
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>>> library_dirs = //opt/acml5.3.1/gfortran64/lib:/usr/lib64 |
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>>> lapack_libs = acml |
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>>> |
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>>> Buliding numpy is ago. This is any scipy update. |
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>>> |
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>>> Am 09.06.2014 13:51, schrieb François Bissey: |
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>>>> numpy not bumpy. Sorry for the noise. |
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>>>> |
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>>>> On 9/06/2014, at 23:42, François Bissey <frp.bissey@×××××.com> wrote: |
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>>>>> Hi, |
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>>>>> |
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>>>>> Could you post the file: |
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>>>>> /var/tmp/portage/sci-libs/scipy-0.14.0/work/scipy-0.14.0-python2_7/site. |
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>>>>> cfg |
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>>>>> for our perusal? You obviously managed to merge bumpy which |
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>>>>> fundamentally |
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>>>>> should have the exact same problem. |
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>>>>> Was it just before scipy or a while ago? |
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>>>>> |
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>>>>> François |
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>>>>> |
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>>>>> On 9/06/2014, at 23:25, Bastian Löffler <Bastian_Loeffler@×××××.de> |
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> wrote: |
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>>>>>> Hi all, |
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>>>>>> |
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>>>>>> I can not build scipy 0.14.0 agaonst the currenct aclm since it |
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>>>>>> complains a missing blas: |
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>>>>>> |
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>>>>>> numpy.distutils.system_info.BlasNotFoundError: |
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>>>>>> Blas ( |
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>>>>>> |
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>>>>>> http://www.netlib.org/blas/ |
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>>>>>> ) libraries not found. |
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>>>>>> |
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>>>>>> Directories to search for the libraries can be specified in the |
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>>>>>> numpy/distutils/site.cfg file (section [blas]) or by setting |
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>>>>>> the BLAS environment variable. |
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>>>>>> |
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>>>>>> * ERROR: sci-libs/scipy-0.14.0::gentoo failed (compile phase): |
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>>>>>> * (no error message) |
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>>>>>> * |
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>>>>>> * Call stack: |
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>>>>>> * ebuild.sh, line 93: Called src_compile |
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>>>>>> * environment, line 4075: Called distutils-r1_src_compile |
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>>>>>> * environment, line 1421: Called _distutils-r1_run_foreach_impl |
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>>>>>> 'python_compile' |
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>>>>>> * environment, line 312: Called python_parallel_foreach_impl |
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>>>>>> 'distutils-r1_run_phase' 'python_compile' |
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>>>>>> * environment, line 3808: Called multibuild_parallel_foreach_variant |
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>>>>>> '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_compile' |
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>>>>>> * environment, line 2855: Called multibuild_foreach_variant |
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>>>>>> '_multibuild_parallel' '_python_multibuild_wrapper' |
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>>>>>> 'distutils-r1_run_phase' 'python_compile' |
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>>>>>> * environment, line 2798: Called _multibuild_run |
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>>>>>> '_multibuild_parallel' '_python_multibuild_wrapper' |
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>>>>>> 'distutils-r1_run_phase' 'python_compile' |
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>>>>>> * environment, line 2796: Called _multibuild_parallel |
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>>>>>> '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_compile' |
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>>>>>> * environment, line 2846: Called _python_multibuild_wrapper |
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>>>>>> 'distutils-r1_run_phase' 'python_compile' |
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>>>>>> * environment, line 914: Called distutils-r1_run_phase |
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>>>>>> 'python_compile' |
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>>>>>> * environment, line 1412: Called python_compile |
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>>>>>> * environment, line 3315: Called distutils-r1_python_compile |
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>>>>>> 'config_fc' '--noopt' '--noarch' |
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>>>>>> * environment, line 1292: Called esetup.py 'build' 'config_fc' |
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>>>>>> '--noopt' '--noarch' |
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>>>>>> * environment, line 1862: Called die |
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>>>>>> * The specific snippet of code: |
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>>>>>> * "${@}" || die |
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>>>>>> * |
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>>>>>> * If you need support, post the output of `emerge --info |
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>>>>>> '=sci-libs/scipy-0.14.0::gentoo'`, |
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>>>>>> * the complete build log and the output of `emerge -pqv |
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>>>>>> '=sci-libs/scipy-0.14.0::gentoo'`. |
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>>>>>> * The complete build log is located at |
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>>>>>> '/var/tmp/portage/sci-libs/scipy-0.14.0/temp/build.log'. |
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>>>>>> * The ebuild environment file is located at |
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>>>>>> '/var/tmp/portage/sci-libs/scipy-0.14.0/temp/environment'. |
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>>>>>> * Working directory: |
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>>>>>> '/var/tmp/portage/sci-libs/scipy-0.14.0/work/scipy-0.14.0-python2_7' |
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>>>>>> * S: '/var/tmp/portage/sci-libs/scipy-0.14.0/work/scipy-0.14.0' |
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>>>>>> /usr/lib64/portage/bin/isolated-functions.sh: line 226: kill: (6675) - |
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>>>>>> No such process |
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>>>>>> blas_opt_info: |
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>>>>>> |
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>>>>>> system_info: |
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>>>>>> NOT AVAILABLE |
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>>>>>> |
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>>>>>> blas_info: |
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>>>>>> libraries not found in ['/usr/lib64'] |
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>>>>>> NOT AVAILABLE |
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>>>>>> |
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>>>>>> blas_src_info: |
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>>>>>> NOT AVAILABLE |
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>>>>>> |
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>>>>>> /usr/lib64/python3.3/distutils/dist.py:258: UserWarning: Unknown |
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>>>>>> distribution option: 'test_suite' |
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>>>>>> |
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>>>>>> warnings.warn(msg) |
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>>>>>> |
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>>>>>> /usr/lib64/python3.3/site-packages/numpy/distutils/system_info.py:1511: |
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>>>>>> |
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>>>>>> UserWarning: |
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>>>>>> Atlas ( |
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>>>>>> |
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>>>>>> http://math-atlas.sourceforge.net/ |
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>>>>>> ) libraries not found. |
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>>>>>> |
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>>>>>> Directories to search for the libraries can be specified in the |
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>>>>>> numpy/distutils/site.cfg file (section [atlas]) or by setting |
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>>>>>> the ATLAS environment variable. |
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>>>>>> |
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>>>>>> warnings.warn(AtlasNotFoundError.__doc__) |
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>>>>>> |
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>>>>>> /usr/lib64/python3.3/site-packages/numpy/distutils/system_info.py:566: |
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>>>>>> UserWarning: Specified path is invalid. |
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>>>>>> |
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>>>>>> warnings.warn('Specified path %s is invalid.' % d) |
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>>>>>> |
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>>>>>> /usr/lib64/python3.3/site-packages/numpy/distutils/system_info.py:1520: |
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>>>>>> |
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>>>>>> UserWarning: |
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>>>>>> Blas ( |
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>>>>>> |
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>>>>>> http://www.netlib.org/blas/ |
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>>>>>> ) libraries not found. |
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>>>>>> |
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>>>>>> Directories to search for the libraries can be specified in the |
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>>>>>> numpy/distutils/site.cfg file (section [blas]) or by setting |
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>>>>>> the BLAS environment variable. |
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>>>>>> |
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>>>>>> warnings.warn(BlasNotFoundError.__doc__) |
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>>>>>> |
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>>>>>> /usr/lib64/python3.3/site-packages/numpy/distutils/system_info.py:1523: |
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>>>>>> |
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>>>>>> UserWarning: |
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>>>>>> Blas ( |
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>>>>>> |
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>>>>>> http://www.netlib.org/blas/ |
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>>>>>> ) sources not found. |
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>>>>>> |
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>>>>>> Directories to search for the sources can be specified in the |
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>>>>>> numpy/distutils/site.cfg file (section [blas_src]) or by setting |
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>>>>>> the BLAS_SRC environment variable. |
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>>>>>> |
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>>>>>> warnings.warn(BlasSrcNotFoundError.__doc__) |
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>>>>>> |
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>>>>>> Traceback (most recent call last): |
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>>>>>> File "setup.py", line 237, in <module> |
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>>>>>> |
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>>>>>> setup_package() |
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>>>>>> |
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>>>>>> File "setup.py", line 234, in setup_package |
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>>>>>> |
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>>>>>> setup(**metadata) |
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>>>>>> |
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>>>>>> File "/usr/lib64/python3.3/site-packages/numpy/distutils/core.py", |
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>>>>>> |
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>>>>>> line 135, in setup |
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>>>>>> |
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>>>>>> config = configuration() |
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>>>>>> |
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>>>>>> File "setup.py", line 173, in configuration |
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>>>>>> |
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>>>>>> config.add_subpackage('scipy') |
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>>>>>> |
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>>>>>> File |
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>>>>>> |
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>>>>>> "/usr/lib64/python3.3/site-packages/numpy/distutils/misc_util.py", line |
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>>>>>> 966, in add_subpackage |
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>>>>>> |
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>>>>>> caller_level = 2) |
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>>>>>> |
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>>>>>> File |
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>>>>>> |
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>>>>>> "/usr/lib64/python3.3/site-packages/numpy/distutils/misc_util.py", line |
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>>>>>> 935, in get_subpackage |
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>>>>>> |
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>>>>>> caller_level = caller_level + 1) |
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>>>>>> |
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>>>>>> File |
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>>>>>> |
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>>>>>> "/usr/lib64/python3.3/site-packages/numpy/distutils/misc_util.py", line |
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>>>>>> 872, in _get_configuration_from_setup_py |
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>>>>>> |
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>>>>>> config = setup_module.configuration(*args) |
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>>>>>> |
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>>>>>> File "scipy/setup.py", line 12, in configuration |
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>>>>>> |
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>>>>>> config.add_subpackage('integrate') |
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>>>>>> |
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>>>>>> File |
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>>>>>> |
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>>>>>> "/usr/lib64/python3.3/site-packages/numpy/distutils/misc_util.py", line |
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>>>>>> 966, in add_subpackage |
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>>>>>> |
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>>>>>> caller_level = 2) |
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>>>>>> |
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>>>>>> File |
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>>>>>> |
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>>>>>> "/usr/lib64/python3.3/site-packages/numpy/distutils/misc_util.py", line |
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>>>>>> 935, in get_subpackage |
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>>>>>> |
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>>>>>> caller_level = caller_level + 1) |
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>>>>>> |
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>>>>>> File |
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>>>>>> |
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>>>>>> "/usr/lib64/python3.3/site-packages/numpy/distutils/misc_util.py", line |
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>>>>>> 872, in _get_configuration_from_setup_py |
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>>>>>> |
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>>>>>> config = setup_module.configuration(*args) |
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>>>>>> |
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>>>>>> File "scipy/integrate/setup.py", line 12, in configuration |
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>>>>>> |
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>>>>>> blas_opt = get_info('blas_opt',notfound_action=2) |
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>>>>>> |
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>>>>>> File |
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>>>>>> |
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>>>>>> "/usr/lib64/python3.3/site-packages/numpy/distutils/system_info.py", |
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>>>>>> line 340, in get_info |
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>>>>>> |
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>>>>>> return cl().get_info(notfound_action) |
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>>>>>> |
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>>>>>> File |
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>>>>>> |
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>>>>>> "/usr/lib64/python3.3/site-packages/numpy/distutils/system_info.py", |
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>>>>>> line 499, in get_info |
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>>>>>> |
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>>>>>> raise self.notfounderror(self.notfounderror.__doc__) |
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>>>>>> |
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>>>>>> numpy.distutils.system_info.BlasNotFoundError: |
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>>>>>> Blas ( |
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>>>>>> |
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>>>>>> http://www.netlib.org/blas/ |
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>>>>>> ) libraries not found. |
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>>>>>> |
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>>>>>> Directories to search for the libraries can be specified in the |
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>>>>>> numpy/distutils/site.cfg file (section [blas]) or by setting |
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>>>>>> the BLAS environment variable. |
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>>>>>> |
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>>>>>> * ERROR: sci-libs/scipy-0.14.0::gentoo failed (compile phase): |
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>>>>>> * (no error message) |
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>>>>>> * |
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>>>>>> * Call stack: |
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>>>>>> * ebuild.sh, line 93: Called src_compile |
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>>>>>> * environment, line 4075: Called distutils-r1_src_compile |
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>>>>>> * environment, line 1421: Called _distutils-r1_run_foreach_impl |
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>>>>>> 'python_compile' |
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>>>>>> * environment, line 312: Called python_parallel_foreach_impl |
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>>>>>> 'distutils-r1_run_phase' 'python_compile' |
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>>>>>> * environment, line 3808: Called multibuild_parallel_foreach_variant |
280 |
>>>>>> '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_compile' |
281 |
>>>>>> * environment, line 2855: Called multibuild_foreach_variant |
282 |
>>>>>> '_multibuild_parallel' '_python_multibuild_wrapper' |
283 |
>>>>>> 'distutils-r1_run_phase' 'python_compile' |
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>>>>>> * environment, line 2798: Called _multibuild_run |
285 |
>>>>>> '_multibuild_parallel' '_python_multibuild_wrapper' |
286 |
>>>>>> 'distutils-r1_run_phase' 'python_compile' |
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>>>>>> * environment, line 2796: Called _multibuild_parallel |
288 |
>>>>>> '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_compile' |
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>>>>>> * environment, line 2846: Called _python_multibuild_wrapper |
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>>>>>> 'distutils-r1_run_phase' 'python_compile' |
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>>>>>> * environment, line 914: Called distutils-r1_run_phase |
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>>>>>> 'python_compile' |
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>>>>>> * environment, line 1412: Called python_compile |
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>>>>>> * environment, line 3315: Called distutils-r1_python_compile |
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>>>>>> 'config_fc' '--noopt' '--noarch' |
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>>>>>> * environment, line 1292: Called esetup.py 'build' 'config_fc' |
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>>>>>> '--noopt' '--noarch' |
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>>>>>> * environment, line 1862: Called die |
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>>>>>> * The specific snippet of code: |
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>>>>>> * "${@}" || die |
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>>>>>> * |
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>>>>>> * If you need support, post the output of `emerge --info |
303 |
>>>>>> '=sci-libs/scipy-0.14.0::gentoo'`, |
304 |
>>>>>> * the complete build log and the output of `emerge -pqv |
305 |
>>>>>> '=sci-libs/scipy-0.14.0::gentoo'`. |
306 |
>>>>>> * The complete build log is located at |
307 |
>>>>>> '/var/tmp/portage/sci-libs/scipy-0.14.0/temp/build.log'. |
308 |
>>>>>> * The ebuild environment file is located at |
309 |
>>>>>> '/var/tmp/portage/sci-libs/scipy-0.14.0/temp/environment'. |
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>>>>>> * Working directory: |
311 |
>>>>>> '/var/tmp/portage/sci-libs/scipy-0.14.0/work/scipy-0.14.0-python3_3' |
312 |
>>>>>> * S: '/var/tmp/portage/sci-libs/scipy-0.14.0/work/scipy-0.14.0' |
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>>>>>> /usr/lib64/portage/bin/isolated-functions.sh: line 226: kill: (6675) - |
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>>>>>> No such process |
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>>>>>> |
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>>>>>>>>> Failed to emerge sci-libs/scipy-0.14.0, Log file: |
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> |
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> |