Re: [gentoo-science] [sage-on-gentoo] dependencies conflict

Quoting fbissey@××××××××××××.nz:

> Quoting fbissey@××××××××××××.nz:
>
>> Quoting v_2e@×××.net:
>>
>>>   Hello, Francois!
>>>
>>> On Sun, 02 Jun 2013 22:07:54 +1200
>>> fbissey@××××××××××××.nz wrote:
>>>
>>>> I think it may be because you have cython in your world file. Can you
>>>> try the following:
>>>> emerge --deselect cython
>>>
>>>   The output of
>>>
>>>     grep cython /var/lib/portage/world
>>>
>>> is empty.
>>>
>>>> then try to merge again. If the problem persist I want the output of
>>>> emerge -ptuDv sage
>>>>
>>>
>>> $ emerge -ptuDv sage
>>>
>>> These are the packages that would be merged, in reverse order:
>>>
>>> Calculating dependencies... done!
>>> [nomerge       ] sci-mathematics/sage-5.9::sage-on-gentoo
>>> [5.8-r2::sage-on-gentoo] USE="latex -lrs% -nauty% -testsuite"
>>> PYTHON_TARGETS="python2_7"
>>> [nomerge       ]  dev-lisp/ecls-12.12.1::sage-on-gentoo  USE="X
>>> threads unicode -debug -emacs -gengc -precisegc"
>>> [ebuild     U  ]   dev-lisp/gentoo-init-1.0 [0.1] 0 kB
>>> [nomerge       ] dev-lisp/gentoo-init-1.0 [0.1]
>>> [nomerge       ]  dev-lisp/asdf-3.0.1:0/3.0.1 [1.89:0/0] USE="-doc%
>>> (-examples%)"
>>> [blocks b      ]   dev-lisp/asdf-binary-locations
>>> ("dev-lisp/asdf-binary-locations" is blocking dev-lisp/asdf-3.0.1)
>>> [uninstall     ]    dev-lisp/asdf-binary-locations-20061018
>>> [ebuild  N     ]   dev-lisp/uiop-3.0.1  380 kB
>>> [ebuild     U  ]    dev-lisp/asdf-3.0.1:0/3.0.1 [1.89:0/0]
>>> USE="-doc% (-examples%)" 0 kB
>>> [ebuild     U  ] sci-mathematics/sage-5.9::sage-on-gentoo
>>> [5.8-r2::sage-on-gentoo] USE="latex -lrs% -nauty% -testsuite"
>>> PYTHON_TARGETS="python2_7" 59,992 kB
>>> [ebuild     U  ]  dev-python/cvxopt-1.1.6::sage-on-gentoo
>>> [1.1.5-r2::gentoo] USE="dsdp fftw glpk gsl -doc -examples"
>>> PYTHON_TARGETS="python2_7 python3_2%* -python2_6" 3,275 kB
>>> [ebuild     U  ]  sci-mathematics/sage-doc-5.9::sage-on-gentoo
>>> [5.8-r2::sage-on-gentoo] USE="html pdf" 72,019 kB
>>> [ebuild     U  ]  dev-python/matplotlib-1.2.1 [1.1.1] USE="cairo
>>> gtk gtk3%* latex -doc -examples -excel -fltk -qt4 {-test} -tk
>>> -wxwidgets" PYTHON_TARGETS="python2_7%* python3_2%* -python2_6%
>>> -python3_1% -python3_3%" 37,546 kB
>>> [ebuild     U  ]  sci-libs/scipy-0.12.0 [0.11.0-r1] USE="-doc
>>> -sparse% {-test} (-umfpack%)" PYTHON_TARGETS="python2_7 python3_2%*
>>> -python2_5 -python2_6 -python3_3%" 8,883 kB
>>> [ebuild     U  ]  sci-mathematics/sage-clib-5.9::sage-on-gentoo
>>> [5.8::sage-on-gentoo] 0 kB
>>> [ebuild     U  ]   sci-mathematics/polybori-0.8.3::sage-on-gentoo
>>> [0.8.2-r4::sage-on-gentoo] USE="gd -doc" 2,128 kB
>>> [ebuild     U  ]    dev-python/ipython-0.13.1-r1::sage-on-gentoo
>>> [0.13.1::sage-on-gentoo] USE="qt4 smp -doc -emacs -examples
>>> -matplotlib -mongodb -notebook -octave {-test} -wxwidgets"
>>> PYTHON_TARGETS="python2_7%* python3_2%* -python2_6% -python3_1%" 0
>>> kB
>>> [ebuild     U  ]     dev-python/pyzmq-13.1.0 [2.2.0.1-r1]
>>> USE="-examples -green% {-test}" PYTHON_TARGETS="python2_7 python3_2
>>> -python2_6 -python3_1 -python3_3" 820 kB
>>> [ebuild     U  ]      net-libs/zeromq-3.2.3 [3.2.2] USE="-pgm
>>> -static-libs {-test}" 2,025 kB
>>> [ebuild     U  ]  dev-python/rpy-2.3.6 [2.3.4] USE="{-test}"
>>> PYTHON_TARGETS="python2_7" 183 kB
>>> [ebuild     U  ]   dev-lang/R-3.0.1 [3.0.0] USE="X bash-completion
>>> cairo jpeg nls openmp png readline -doc -icu -java -lapack -minimal
>>> -perl (-prefix) -profile -static-libs -tiff -tk" 24,911 kB
>>> [ebuild     U  ]  sci-mathematics/pari-2.5.4::sage-on-gentoo
>>> [2.5.3-r2::sage-on-gentoo] USE="X data gmp qt4 -doc -fltk" 2,659 kB
>>> [nomerge       ] sci-libs/scipy-0.12.0 [0.11.0-r1] USE="-doc
>>> -sparse% {-test} (-umfpack%)" PYTHON_TARGETS="python2_7 python3_2%*
>>> -python2_5 -python2_6 -python3_3%"
>>> [ebuild     U  ]  dev-python/imaging-1.1.7-r4 [1.1.7-r3] USE="jpeg
>>> truetype zlib -doc -examples -lcms -scanner {-test} -tiff -tk"
>>> PYTHON_TARGETS="python2_7 -python2_5 -python2_6" 0 kB
>>> [nomerge       ] dev-python/matplotlib-1.2.1 [1.1.1] USE="cairo gtk
>>> gtk3%* latex -doc -examples -excel -fltk -qt4 {-test} -tk
>>> -wxwidgets" PYTHON_TARGETS="python2_7%* python3_2%* -python2_6%
>>> -python3_1% -python3_3%"
>>> [ebuild  NS    ]  dev-python/pygobject-3.4.2-r1:3 [2.28.6-r53:2]
>>> USE="cairo threads -examples {-test}" PYTHON_TARGETS="python2_7
>>> python3_2 -python2_6 -python3_1 -python3_3" 601 kB
>>> [nomerge       ] sci-mathematics/sage-5.9::sage-on-gentoo
>>> [5.8-r2::sage-on-gentoo] USE="latex -lrs% -nauty% -testsuite"
>>> PYTHON_TARGETS="python2_7"
>>> [nomerge       ]
>>> sci-mathematics/sage-notebook-0.10.4-r2::sage-on-gentoo  USE="-java
>>> -server {-test}" PYTHON_TARGETS="python2_7"
>>> [nomerge       ]
>>> dev-python/flask-autoindex-0.4.1-r1::sage-on-gentoo
>>> PYTHON_TARGETS="python2_7"
>>> [ebuild     U  ]    dev-python/flask-0.9-r2 [0.9-r1] USE="-examples
>>> {-test}" PYTHON_TARGETS="python2_7 -pypy1_9 -pypy2_0 -python2_5
>>> -python2_6" 0 kB
>>> [ebuild     U  ]  dev-python/sqlalchemy-0.8.1 [0.8.0] USE="sqlite
>>> -doc -examples {-test} (-firebird%) (-mssql%) (-mysql%)
>>> (-postgres%)" PYTHON_TARGETS="python2_7 python3_2%* -pypy1_9%
>>> -pypy2_0% -python2_5% -python2_6 -python3_3%" 3,688 kB
>>> [ebuild     UD ]  dev-python/cython-0.19::sage-on-gentoo
>>> [0.19.1::sage-on-gentoo] USE="-doc {-test}"
>>> PYTHON_TARGETS="python2_7 python3_2 -python2_5 -python2_6
>>> -python3_1 -python3_3" 1,350 kB
>>> [nomerge       ]
>>> sci-mathematics/sage-notebook-0.10.4-r2::sage-on-gentoo  USE="-java
>>> -server {-test}" PYTHON_TARGETS="python2_7"
>>> [nomerge       ]  dev-python/flask-babel-0.8  USE="-doc {-test}"
>>> [nomerge       ]   dev-python/Babel-0.9.6-r1
>>> PYTHON_TARGETS="python2_7 -pypy1_9 -pypy2_0 -python2_5 -python2_6"
>>> [ebuild     U  ]    dev-python/pytz-2013b [2012j]
>>> PYTHON_TARGETS="python2_7 python3_2 -pypy1_9 -pypy2_0 -python2_5
>>> -python2_6 -python3_1 -python3_3" 195 kB
>>> [nomerge       ] media-sound/vorbis-tools-1.4.0  USE="flac nls
>>> ogg123 speex -kate"
>>> [nomerge       ]  media-libs/libao-1.1.0-r1  USE="alsa mmap nas
>>> -pulseaudio -static-libs"
>>> [nomerge       ]   media-libs/nas-1.9.3  USE="-doc -static-libs"
>>> [ebuild     U  ]    x11-libs/libXres-1.0.7 [1.0.6]
>>> USE="-static-libs" 277 kB
>>> [nomerge       ] sci-mathematics/sage-5.9::sage-on-gentoo
>>> [5.8-r2::sage-on-gentoo] USE="latex -lrs% -nauty% -testsuite"
>>> PYTHON_TARGETS="python2_7"
>>> [ebuild     U  ]  sci-mathematics/singular-3.1.5-r1::sage-on-gentoo
>>> [3.1.5::sage-on-gentoo] USE="python readline -boost -doc -emacs
>>> -examples {-test}" PYTHON_SINGLE_TARGET="python2_7%* -python2_6%"
>>> PYTHON_TARGETS="python2_7%* -python2_6%" 0 kB
>>> [ebuild     U  ]  sci-mathematics/gmp-ecm-6.4.4-r2::sage-on-gentoo
>>> [6.4.4-r1::sage-on-gentoo] USE="custom-tune -blas -gwnum -openmp
>>> -static-libs {-test}" 0 kB
>>> [nomerge       ] sci-mathematics/sage-5.9::sage-on-gentoo
>>> [5.8-r2::sage-on-gentoo] USE="latex -lrs% -nauty% -testsuite"
>>> PYTHON_TARGETS="python2_7"
>>> [nomerge       ]  dev-python/sympy-0.7.2-r2::sage-on-gentoo
>>> USE="latex opengl pdf png -doc -examples -gtk -imaging -ipython
>>> -mathml -pyglet {-test} -texmacs" PYTHON_TARGETS="python2_7
>>> -python2_6"
>>> [nomerge       ]   dev-texlive/texlive-fontsextra-2012  USE="-doc -source"
>>> [nomerge       ]    dev-texlive/texlive-basic-2012  USE="-doc -source"
>>> [nomerge       ]     dev-texlive/texlive-documentation-base-2012
>>> USE="-source"
>>> [nomerge       ]      app-text/texlive-core-2012-r1  USE="X -cjk
>>> -doc -source -tk -xetex"
>>> [ebuild     U  ]       x11-libs/libXp-1.0.2 [1.0.1-r1]
>>> USE="-static-libs" ABI_X86="(64) -32 (-x32)" 292 kB
>>> [nomerge       ] dev-python/matplotlib-1.2.1 [1.1.1] USE="cairo gtk
>>> gtk3%* latex -doc -examples -excel -fltk -qt4 {-test} -tk
>>> -wxwidgets" PYTHON_TARGETS="python2_7%* python3_2%* -python2_6%
>>> -python3_1% -python3_3%"
>>> [ebuild  N     ]  media-fonts/stix-fonts-1.0.0-r1  USE="X -doc" 2,697 kB
>>> [nomerge       ] sci-mathematics/sage-5.9::sage-on-gentoo
>>> [5.8-r2::sage-on-gentoo] USE="latex -lrs% -nauty% -testsuite"
>>> PYTHON_TARGETS="python2_7"
>>> [nomerge       ]  dev-lang/R-3.0.1 [3.0.0] USE="X bash-completion
>>> cairo jpeg nls openmp png readline -doc -icu -java -lapack -minimal
>>> -perl (-prefix) -profile -static-libs -tiff -tk"
>>> [ebuild     U  ]   dev-libs/libpcre-8.33:3 [8.32:3] USE="bzip2 cxx
>>> jit readline recursion-limit (unicode) zlib -libedit -pcre16
>>> -pcre32% -static-libs" 1,408 kB
>>> [ebuild     U  ]  sci-mathematics/sage-extcode-5.9::sage-on-gentoo
>>> [5.8::sage-on-gentoo] 12,026 kB
>>> [ebuild     U  ]
>>> sci-mathematics/sage-baselayout-5.9::sage-on-gentoo
>>> [5.8-r1::sage-on-gentoo] USE="X -debug -testsuite -tools"
>>> PYTHON_TARGETS="python2_7" 1,449 kB
>>> [blocks B      ] dev-lisp/gentoo-init ("dev-lisp/gentoo-init" is
>>> blocking dev-lisp/asdf-3.0.1)
>>>
>>> Total: 30 packages (26 upgrades, 1 downgrade, 2 new, 1 in new slot,
>>> 1 uninstall), Size of downloads: 238,793 kB
>>> Conflict: 2 blocks (1 unsatisfied)
>>>
>>>  * Error: The above package list contains packages which cannot be
>>>  * installed at the same time on the same system.
>>>
>>>   (dev-lisp/gentoo-init-1.0::gentoo, ebuild scheduled for merge)
>>> pulled in by
>>>     dev-lisp/gentoo-init required by
>>> (dev-lisp/ecls-12.12.1::sage-on-gentoo, installed)
>>>
>>>   (dev-lisp/asdf-3.0.1::gentoo, ebuild scheduled for merge) pulled in by
>>>     ~dev-lisp/asdf-3.0.1 required by (dev-lisp/uiop-3.0.1::gentoo,
>>> ebuild scheduled for merge)
>>>     >=dev-lisp/asdf-2.0 required by
>>> (dev-lisp/gentoo-init-1.0::gentoo, ebuild scheduled for merge)
>>>
>>>
>>
>> No cython there. I have just committed stuff for the lisp stuff. Martin Von
>> Gagern just spent the last 12 hours solving the maxima issue that was
>> preventing us to allow you to move to asdf-3.0.1. And I spent some time
>> adjusting the overlay so the dependencies allow you to do it [nay,
>> forces you
>> to do it - I will need to add a few more keywords].
>>
>> can you sync the overlay and try again, please. And before merging you
>> may want
>> to unmerge ecm.
>>
> Just found I forgot to commit a patch. If you miss a patch, you'll have
> to sync
> again.
>
Big issue with maxima 5.29.1-r2, try 5.30 until I fix it, or upgrade all the
dependencies to 5.30 if it is too hard to fix.

Francois