Gentoo Archives: gentoo-science

From: "François Bissey" <frp.bissey@×××××.com>
To: gentoo-science@l.g.o
Subject: Re: [gentoo-science] [sage-on-gentoo] Sage 7.3 crashes
Date: Wed, 12 Oct 2016 19:55:01
Message-Id: 727d3d45-922f-77f1-f309-a2f4359f13a0@gmail.com
In Reply to: Re: [gentoo-science] [sage-on-gentoo] Sage 7.3 crashes by v_2e@ukr.net
1 OK for some reason it wasn't linked to cblas. What does
2 pkg-config --libs linbox
3 says?
4
5 Francois
6
7 On 13/10/16 04:11, v_2e@×××.net wrote:
8 > On Wed, 12 Oct 2016 07:36:16 +1300
9 > François Bissey <frp.bissey@×××××.com> wrote:
10 >
11 >> ldd
12 >> -r /usr/lib64/python2.7/site-packages/sage/matrix/matrix_modn_dense_float.so
13 >> and readelf
14 >> -d /usr/lib64/python2.7/site-packages/sage/matrix/matrix_modn_dense_float.so
15 >> output please.
16 >>
17 > ldd
18 > -r /usr/lib64/python2.7/site-packages/sage/matrix/matrix_modn_dense_float.so
19 >
20 > linux-vdso.so.1 (0x00007fffc89f3000)
21 > liblinbox.so.0 => /usr/lib64/liblinbox.so.0 (0x00007fa93942a000)
22 > libgivaro.so.0 => /usr/lib64/libgivaro.so.0 (0x00007fa9391cb000)
23 > libgmp.so.10 => /usr/lib64/libgmp.so.10 (0x00007fa938f51000)
24 > libstdc++.so.6 => /usr/lib/gcc/x86_64-pc-linux-gnu/5.4.0/libstdc++.so.6 (0x00007fa938b52000)
25 > libpython2.7.so.1.0 => /usr/lib64/libpython2.7.so.1.0 (0x00007fa938771000)
26 > libm.so.6 => /lib64/libm.so.6 (0x00007fa93846d000)
27 > libgcc_s.so.1 => /usr/lib/gcc/x86_64-pc-linux-gnu/5.4.0/libgcc_s.so.1 (0x00007fa938256000)
28 > libc.so.6 => /lib64/libc.so.6 (0x00007fa937ebe000)
29 > libgmpxx.so.4 => /usr/lib64/libgmpxx.so.4 (0x00007fa937cb6000)
30 > /lib64/ld-linux-x86-64.so.2 (0x000055f9329e7000)
31 > libpthread.so.0 => /lib64/libpthread.so.0 (0x00007fa937a99000)
32 > libdl.so.2 => /lib64/libdl.so.2 (0x00007fa937895000)
33 > libutil.so.1 => /lib64/libutil.so.1 (0x00007fa937691000)
34 > undefined symbol: cblas_dger (/usr/lib64/python2.7/site-packages/sage/matrix/matrix_modn_dense_float.so)
35 > undefined symbol: cblas_strsm (/usr/lib64/python2.7/site-packages/sage/matrix/matrix_modn_dense_float.so)
36 > undefined symbol: cblas_sgemm (/usr/lib64/python2.7/site-packages/sage/matrix/matrix_modn_dense_float.so)
37 > undefined symbol: cblas_dgemm (/usr/lib64/python2.7/site-packages/sage/matrix/matrix_modn_dense_float.so)
38 > undefined symbol: cblas_sgemv (/usr/lib64/python2.7/site-packages/sage/matrix/matrix_modn_dense_float.so)
39 > undefined symbol: cblas_strmm (/usr/lib64/python2.7/site-packages/sage/matrix/matrix_modn_dense_float.so)
40 > undefined symbol: cblas_dgemv (/usr/lib64/python2.7/site-packages/sage/matrix/matrix_modn_dense_float.so)
41 >
42 >
43 > ======================
44 >
45 > readelf -d /usr/lib64/python2.7/site-packages/sage/matrix/matrix_modn_dense_float.so
46 >
47 > Dynamic section at offset 0x75a68 contains 32 entries:
48 > Tag Type Name/Value
49 > 0x0000000000000001 (NEEDED) Shared library: [liblinbox.so.0]
50 > 0x0000000000000001 (NEEDED) Shared library: [libgivaro.so.0]
51 > 0x0000000000000001 (NEEDED) Shared library: [libgmp.so.10]
52 > 0x0000000000000001 (NEEDED) Shared library: [libstdc++.so.6]
53 > 0x0000000000000001 (NEEDED) Shared library: [libpython2.7.so.1.0]
54 > 0x0000000000000001 (NEEDED) Shared library: [libm.so.6]
55 > 0x0000000000000001 (NEEDED) Shared library: [libgcc_s.so.1]
56 > 0x0000000000000001 (NEEDED) Shared library: [libc.so.6]
57 > 0x000000000000000c (INIT) 0xe620
58 > 0x000000000000000d (FINI) 0x6cbb8
59 > 0x0000000000000019 (INIT_ARRAY) 0x275950
60 > 0x000000000000001b (INIT_ARRAYSZ) 16 (bytes)
61 > 0x000000000000001a (FINI_ARRAY) 0x275960
62 > 0x000000000000001c (FINI_ARRAYSZ) 8 (bytes)
63 > 0x0000000000000004 (HASH) 0x1c8
64 > 0x000000006ffffef5 (GNU_HASH) 0x10d0
65 > 0x0000000000000005 (STRTAB) 0x4198
66 > 0x0000000000000006 (SYMTAB) 0x1ab0
67 > 0x000000000000000a (STRSZ) 22135 (bytes)
68 > 0x000000000000000b (SYMENT) 24 (bytes)
69 > 0x0000000000000003 (PLTGOT) 0x275fe8
70 > 0x0000000000000002 (PLTRELSZ) 6696 (bytes)
71 > 0x0000000000000014 (PLTREL) RELA
72 > 0x0000000000000017 (JMPREL) 0xcbf8
73 > 0x0000000000000007 (RELA) 0x9c70
74 > 0x0000000000000008 (RELASZ) 12168 (bytes)
75 > 0x0000000000000009 (RELAENT) 24 (bytes)
76 > 0x000000006ffffffe (VERNEED) 0x9b50
77 > 0x000000006fffffff (VERNEEDNUM) 4
78 > 0x000000006ffffff0 (VERSYM) 0x9810
79 > 0x000000006ffffff9 (RELACOUNT) 383
80 > 0x0000000000000000 (NULL) 0x0
81 >
82 > ====================
83 >
84 > Vladimir
85 >
86 > -----
87 > <v_2e@×××.net>
88 >

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