Gentoo Archives: gentoo-science

From: "François Bissey" <frp.bissey@×××××.com>
To: gentoo-science@l.g.o
Subject: Re: [gentoo-science] Trouble building scipy-0.14.0 against acml
Date: Mon, 09 Jun 2014 11:51:38
Message-Id: 4054FC76-6D38-434E-8DAC-3433619F9222@gmail.com
In Reply to: Re: [gentoo-science] Trouble building scipy-0.14.0 against acml by "François Bissey"
1 numpy not bumpy. Sorry for the noise.
2
3 On 9/06/2014, at 23:42, François Bissey <frp.bissey@×××××.com> wrote:
4
5 > Hi,
6 >
7 > Could you post the file:
8 > /var/tmp/portage/sci-libs/scipy-0.14.0/work/scipy-0.14.0-python2_7/site.cfg
9 > for our perusal? You obviously managed to merge bumpy which fundamentally
10 > should have the exact same problem.
11 > Was it just before scipy or a while ago?
12 >
13 > François
14 >
15 > On 9/06/2014, at 23:25, Bastian Löffler <Bastian_Loeffler@×××××.de> wrote:
16 >
17 >> Hi all,
18 >>
19 >> I can not build scipy 0.14.0 agaonst the currenct aclm since it
20 >> complains a missing blas:
21 >>
22 >> numpy.distutils.system_info.BlasNotFoundError:
23 >> Blas (
24 >> http://www.netlib.org/blas/
25 >> ) libraries not found.
26 >> Directories to search for the libraries can be specified in the
27 >> numpy/distutils/site.cfg file (section [blas]) or by setting
28 >> the BLAS environment variable.
29 >> * ERROR: sci-libs/scipy-0.14.0::gentoo failed (compile phase):
30 >> * (no error message)
31 >> *
32 >> * Call stack:
33 >> * ebuild.sh, line 93: Called src_compile
34 >> * environment, line 4075: Called distutils-r1_src_compile
35 >> * environment, line 1421: Called _distutils-r1_run_foreach_impl
36 >> 'python_compile'
37 >> * environment, line 312: Called python_parallel_foreach_impl
38 >> 'distutils-r1_run_phase' 'python_compile'
39 >> * environment, line 3808: Called multibuild_parallel_foreach_variant
40 >> '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_compile'
41 >> * environment, line 2855: Called multibuild_foreach_variant
42 >> '_multibuild_parallel' '_python_multibuild_wrapper'
43 >> 'distutils-r1_run_phase' 'python_compile'
44 >> * environment, line 2798: Called _multibuild_run
45 >> '_multibuild_parallel' '_python_multibuild_wrapper'
46 >> 'distutils-r1_run_phase' 'python_compile'
47 >> * environment, line 2796: Called _multibuild_parallel
48 >> '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_compile'
49 >> * environment, line 2846: Called _python_multibuild_wrapper
50 >> 'distutils-r1_run_phase' 'python_compile'
51 >> * environment, line 914: Called distutils-r1_run_phase 'python_compile'
52 >> * environment, line 1412: Called python_compile
53 >> * environment, line 3315: Called distutils-r1_python_compile
54 >> 'config_fc' '--noopt' '--noarch'
55 >> * environment, line 1292: Called esetup.py 'build' 'config_fc'
56 >> '--noopt' '--noarch'
57 >> * environment, line 1862: Called die
58 >> * The specific snippet of code:
59 >> * "${@}" || die
60 >> *
61 >> * If you need support, post the output of `emerge --info
62 >> '=sci-libs/scipy-0.14.0::gentoo'`,
63 >> * the complete build log and the output of `emerge -pqv
64 >> '=sci-libs/scipy-0.14.0::gentoo'`.
65 >> * The complete build log is located at
66 >> '/var/tmp/portage/sci-libs/scipy-0.14.0/temp/build.log'.
67 >> * The ebuild environment file is located at
68 >> '/var/tmp/portage/sci-libs/scipy-0.14.0/temp/environment'.
69 >> * Working directory:
70 >> '/var/tmp/portage/sci-libs/scipy-0.14.0/work/scipy-0.14.0-python2_7'
71 >> * S: '/var/tmp/portage/sci-libs/scipy-0.14.0/work/scipy-0.14.0'
72 >> /usr/lib64/portage/bin/isolated-functions.sh: line 226: kill: (6675) -
73 >> No such process
74 >> blas_opt_info:
75 >> system_info:
76 >> NOT AVAILABLE
77 >>
78 >> blas_info:
79 >> libraries not found in ['/usr/lib64']
80 >> NOT AVAILABLE
81 >>
82 >> blas_src_info:
83 >> NOT AVAILABLE
84 >>
85 >> /usr/lib64/python3.3/distutils/dist.py:258: UserWarning: Unknown
86 >> distribution option: 'test_suite'
87 >> warnings.warn(msg)
88 >> /usr/lib64/python3.3/site-packages/numpy/distutils/system_info.py:1511:
89 >> UserWarning:
90 >> Atlas (
91 >> http://math-atlas.sourceforge.net/
92 >> ) libraries not found.
93 >> Directories to search for the libraries can be specified in the
94 >> numpy/distutils/site.cfg file (section [atlas]) or by setting
95 >> the ATLAS environment variable.
96 >> warnings.warn(AtlasNotFoundError.__doc__)
97 >> /usr/lib64/python3.3/site-packages/numpy/distutils/system_info.py:566:
98 >> UserWarning: Specified path is invalid.
99 >> warnings.warn('Specified path %s is invalid.' % d)
100 >> /usr/lib64/python3.3/site-packages/numpy/distutils/system_info.py:1520:
101 >> UserWarning:
102 >> Blas (
103 >> http://www.netlib.org/blas/
104 >> ) libraries not found.
105 >> Directories to search for the libraries can be specified in the
106 >> numpy/distutils/site.cfg file (section [blas]) or by setting
107 >> the BLAS environment variable.
108 >> warnings.warn(BlasNotFoundError.__doc__)
109 >> /usr/lib64/python3.3/site-packages/numpy/distutils/system_info.py:1523:
110 >> UserWarning:
111 >> Blas (
112 >> http://www.netlib.org/blas/
113 >> ) sources not found.
114 >> Directories to search for the sources can be specified in the
115 >> numpy/distutils/site.cfg file (section [blas_src]) or by setting
116 >> the BLAS_SRC environment variable.
117 >> warnings.warn(BlasSrcNotFoundError.__doc__)
118 >> Traceback (most recent call last):
119 >> File "setup.py", line 237, in <module>
120 >> setup_package()
121 >> File "setup.py", line 234, in setup_package
122 >> setup(**metadata)
123 >> File "/usr/lib64/python3.3/site-packages/numpy/distutils/core.py",
124 >> line 135, in setup
125 >> config = configuration()
126 >> File "setup.py", line 173, in configuration
127 >> config.add_subpackage('scipy')
128 >> File
129 >> "/usr/lib64/python3.3/site-packages/numpy/distutils/misc_util.py", line
130 >> 966, in add_subpackage
131 >> caller_level = 2)
132 >> File
133 >> "/usr/lib64/python3.3/site-packages/numpy/distutils/misc_util.py", line
134 >> 935, in get_subpackage
135 >> caller_level = caller_level + 1)
136 >> File
137 >> "/usr/lib64/python3.3/site-packages/numpy/distutils/misc_util.py", line
138 >> 872, in _get_configuration_from_setup_py
139 >> config = setup_module.configuration(*args)
140 >> File "scipy/setup.py", line 12, in configuration
141 >> config.add_subpackage('integrate')
142 >> File
143 >> "/usr/lib64/python3.3/site-packages/numpy/distutils/misc_util.py", line
144 >> 966, in add_subpackage
145 >> caller_level = 2)
146 >> File
147 >> "/usr/lib64/python3.3/site-packages/numpy/distutils/misc_util.py", line
148 >> 935, in get_subpackage
149 >> caller_level = caller_level + 1)
150 >> File
151 >> "/usr/lib64/python3.3/site-packages/numpy/distutils/misc_util.py", line
152 >> 872, in _get_configuration_from_setup_py
153 >> config = setup_module.configuration(*args)
154 >> File "scipy/integrate/setup.py", line 12, in configuration
155 >> blas_opt = get_info('blas_opt',notfound_action=2)
156 >> File
157 >> "/usr/lib64/python3.3/site-packages/numpy/distutils/system_info.py",
158 >> line 340, in get_info
159 >> return cl().get_info(notfound_action)
160 >> File
161 >> "/usr/lib64/python3.3/site-packages/numpy/distutils/system_info.py",
162 >> line 499, in get_info
163 >> raise self.notfounderror(self.notfounderror.__doc__)
164 >> numpy.distutils.system_info.BlasNotFoundError:
165 >> Blas (
166 >> http://www.netlib.org/blas/
167 >> ) libraries not found.
168 >> Directories to search for the libraries can be specified in the
169 >> numpy/distutils/site.cfg file (section [blas]) or by setting
170 >> the BLAS environment variable.
171 >> * ERROR: sci-libs/scipy-0.14.0::gentoo failed (compile phase):
172 >> * (no error message)
173 >> *
174 >> * Call stack:
175 >> * ebuild.sh, line 93: Called src_compile
176 >> * environment, line 4075: Called distutils-r1_src_compile
177 >> * environment, line 1421: Called _distutils-r1_run_foreach_impl
178 >> 'python_compile'
179 >> * environment, line 312: Called python_parallel_foreach_impl
180 >> 'distutils-r1_run_phase' 'python_compile'
181 >> * environment, line 3808: Called multibuild_parallel_foreach_variant
182 >> '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_compile'
183 >> * environment, line 2855: Called multibuild_foreach_variant
184 >> '_multibuild_parallel' '_python_multibuild_wrapper'
185 >> 'distutils-r1_run_phase' 'python_compile'
186 >> * environment, line 2798: Called _multibuild_run
187 >> '_multibuild_parallel' '_python_multibuild_wrapper'
188 >> 'distutils-r1_run_phase' 'python_compile'
189 >> * environment, line 2796: Called _multibuild_parallel
190 >> '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_compile'
191 >> * environment, line 2846: Called _python_multibuild_wrapper
192 >> 'distutils-r1_run_phase' 'python_compile'
193 >> * environment, line 914: Called distutils-r1_run_phase 'python_compile'
194 >> * environment, line 1412: Called python_compile
195 >> * environment, line 3315: Called distutils-r1_python_compile
196 >> 'config_fc' '--noopt' '--noarch'
197 >> * environment, line 1292: Called esetup.py 'build' 'config_fc'
198 >> '--noopt' '--noarch'
199 >> * environment, line 1862: Called die
200 >> * The specific snippet of code:
201 >> * "${@}" || die
202 >> *
203 >> * If you need support, post the output of `emerge --info
204 >> '=sci-libs/scipy-0.14.0::gentoo'`,
205 >> * the complete build log and the output of `emerge -pqv
206 >> '=sci-libs/scipy-0.14.0::gentoo'`.
207 >> * The complete build log is located at
208 >> '/var/tmp/portage/sci-libs/scipy-0.14.0/temp/build.log'.
209 >> * The ebuild environment file is located at
210 >> '/var/tmp/portage/sci-libs/scipy-0.14.0/temp/environment'.
211 >> * Working directory:
212 >> '/var/tmp/portage/sci-libs/scipy-0.14.0/work/scipy-0.14.0-python3_3'
213 >> * S: '/var/tmp/portage/sci-libs/scipy-0.14.0/work/scipy-0.14.0'
214 >> /usr/lib64/portage/bin/isolated-functions.sh: line 226: kill: (6675) -
215 >> No such process
216 >>
217 >>>>> Failed to emerge sci-libs/scipy-0.14.0, Log file:
218 >>
219 >>
220 >>
221 >>
222 >>
223 >
224 >

Replies

Subject Author
Re: [gentoo-science] Trouble building scipy-0.14.0 against acml "Bastian Löffler" <Bastian_Loeffler@×××××.de>