Re: [gentoo-science] Trouble building scipy-0.14.0 against acml

[François Bissey]

Hi,

Could you post the file:
/var/tmp/portage/sci-libs/scipy-0.14.0/work/scipy-0.14.0-python2_7/site.cfg
for our perusal? You obviously managed to merge bumpy which fundamentally
should have the exact same problem. 
Was it just before scipy or a while ago?

François

On 9/06/2014, at 23:25, Bastian Löffler <Bastian_Loeffler@×××××.de> wrote:

> Hi all,
>
> I can not build scipy 0.14.0 agaonst the currenct aclm since it
> complains a missing blas:
>
> numpy.distutils.system_info.BlasNotFoundError:
>     Blas (
> http://www.netlib.org/blas/
> ) libraries not found.
>     Directories to search for the libraries can be specified in the
>     numpy/distutils/site.cfg file (section [blas]) or by setting
>     the BLAS environment variable.
>  * ERROR: sci-libs/scipy-0.14.0::gentoo failed (compile phase):
>  *   (no error message)
>  *
>  * Call stack:
>  *     ebuild.sh, line   93:  Called src_compile
>  *   environment, line 4075:  Called distutils-r1_src_compile
>  *   environment, line 1421:  Called _distutils-r1_run_foreach_impl
> 'python_compile'
>  *   environment, line  312:  Called python_parallel_foreach_impl
> 'distutils-r1_run_phase' 'python_compile'
>  *   environment, line 3808:  Called multibuild_parallel_foreach_variant
> '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_compile'
>  *   environment, line 2855:  Called multibuild_foreach_variant
> '_multibuild_parallel' '_python_multibuild_wrapper'
> 'distutils-r1_run_phase' 'python_compile'
>  *   environment, line 2798:  Called _multibuild_run
> '_multibuild_parallel' '_python_multibuild_wrapper'
> 'distutils-r1_run_phase' 'python_compile'
>  *   environment, line 2796:  Called _multibuild_parallel
> '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_compile'
>  *   environment, line 2846:  Called _python_multibuild_wrapper
> 'distutils-r1_run_phase' 'python_compile'
>  *   environment, line  914:  Called distutils-r1_run_phase 'python_compile'
>  *   environment, line 1412:  Called python_compile
>  *   environment, line 3315:  Called distutils-r1_python_compile
> 'config_fc' '--noopt' '--noarch'
>  *   environment, line 1292:  Called esetup.py 'build' 'config_fc'
> '--noopt' '--noarch'
>  *   environment, line 1862:  Called die
>  * The specific snippet of code:
>  *       "${@}" || die
>  *
>  * If you need support, post the output of `emerge --info
> '=sci-libs/scipy-0.14.0::gentoo'`,
>  * the complete build log and the output of `emerge -pqv
> '=sci-libs/scipy-0.14.0::gentoo'`.
>  * The complete build log is located at
> '/var/tmp/portage/sci-libs/scipy-0.14.0/temp/build.log'.
>  * The ebuild environment file is located at
> '/var/tmp/portage/sci-libs/scipy-0.14.0/temp/environment'.
>  * Working directory:
> '/var/tmp/portage/sci-libs/scipy-0.14.0/work/scipy-0.14.0-python2_7'
>  * S: '/var/tmp/portage/sci-libs/scipy-0.14.0/work/scipy-0.14.0'
> /usr/lib64/portage/bin/isolated-functions.sh: line 226: kill: (6675) -
> No such process
> blas_opt_info:
> system_info:
>   NOT AVAILABLE
>
> blas_info:
>   libraries  not found in ['/usr/lib64']
>   NOT AVAILABLE
>
> blas_src_info:
>   NOT AVAILABLE
>
> /usr/lib64/python3.3/distutils/dist.py:258: UserWarning: Unknown
> distribution option: 'test_suite'
>   warnings.warn(msg)
> /usr/lib64/python3.3/site-packages/numpy/distutils/system_info.py:1511:
> UserWarning:
>     Atlas (
> http://math-atlas.sourceforge.net/
> ) libraries not found.
>     Directories to search for the libraries can be specified in the
>     numpy/distutils/site.cfg file (section [atlas]) or by setting
>     the ATLAS environment variable.
>   warnings.warn(AtlasNotFoundError.__doc__)
> /usr/lib64/python3.3/site-packages/numpy/distutils/system_info.py:566:
> UserWarning: Specified path  is invalid.
>   warnings.warn('Specified path %s is invalid.' % d)
> /usr/lib64/python3.3/site-packages/numpy/distutils/system_info.py:1520:
> UserWarning:
>     Blas (
> http://www.netlib.org/blas/
> ) libraries not found.
>     Directories to search for the libraries can be specified in the
>     numpy/distutils/site.cfg file (section [blas]) or by setting
>     the BLAS environment variable.
>   warnings.warn(BlasNotFoundError.__doc__)
> /usr/lib64/python3.3/site-packages/numpy/distutils/system_info.py:1523:
> UserWarning:
>     Blas (
> http://www.netlib.org/blas/
> ) sources not found.
>     Directories to search for the sources can be specified in the
>     numpy/distutils/site.cfg file (section [blas_src]) or by setting
>     the BLAS_SRC environment variable.
>   warnings.warn(BlasSrcNotFoundError.__doc__)
> Traceback (most recent call last):
>   File "setup.py", line 237, in <module>
>     setup_package()
>   File "setup.py", line 234, in setup_package
>     setup(**metadata)
>   File "/usr/lib64/python3.3/site-packages/numpy/distutils/core.py",
> line 135, in setup
>     config = configuration()
>   File "setup.py", line 173, in configuration
>     config.add_subpackage('scipy')
>   File
> "/usr/lib64/python3.3/site-packages/numpy/distutils/misc_util.py", line
> 966, in add_subpackage
>     caller_level = 2)
>   File
> "/usr/lib64/python3.3/site-packages/numpy/distutils/misc_util.py", line
> 935, in get_subpackage
>     caller_level = caller_level + 1)
>   File
> "/usr/lib64/python3.3/site-packages/numpy/distutils/misc_util.py", line
> 872, in _get_configuration_from_setup_py
>     config = setup_module.configuration(*args)
>   File "scipy/setup.py", line 12, in configuration
>     config.add_subpackage('integrate')
>   File
> "/usr/lib64/python3.3/site-packages/numpy/distutils/misc_util.py", line
> 966, in add_subpackage
>     caller_level = 2)
>   File
> "/usr/lib64/python3.3/site-packages/numpy/distutils/misc_util.py", line
> 935, in get_subpackage
>     caller_level = caller_level + 1)
>   File
> "/usr/lib64/python3.3/site-packages/numpy/distutils/misc_util.py", line
> 872, in _get_configuration_from_setup_py
>     config = setup_module.configuration(*args)
>   File "scipy/integrate/setup.py", line 12, in configuration
>     blas_opt = get_info('blas_opt',notfound_action=2)
>   File
> "/usr/lib64/python3.3/site-packages/numpy/distutils/system_info.py",
> line 340, in get_info
>     return cl().get_info(notfound_action)
>   File
> "/usr/lib64/python3.3/site-packages/numpy/distutils/system_info.py",
> line 499, in get_info
>     raise self.notfounderror(self.notfounderror.__doc__)
> numpy.distutils.system_info.BlasNotFoundError:
>     Blas (
> http://www.netlib.org/blas/
> ) libraries not found.
>     Directories to search for the libraries can be specified in the
>     numpy/distutils/site.cfg file (section [blas]) or by setting
>     the BLAS environment variable.
>  * ERROR: sci-libs/scipy-0.14.0::gentoo failed (compile phase):
>  *   (no error message)
>  *
>  * Call stack:
>  *     ebuild.sh, line   93:  Called src_compile
>  *   environment, line 4075:  Called distutils-r1_src_compile
>  *   environment, line 1421:  Called _distutils-r1_run_foreach_impl
> 'python_compile'
>  *   environment, line  312:  Called python_parallel_foreach_impl
> 'distutils-r1_run_phase' 'python_compile'
>  *   environment, line 3808:  Called multibuild_parallel_foreach_variant
> '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_compile'
>  *   environment, line 2855:  Called multibuild_foreach_variant
> '_multibuild_parallel' '_python_multibuild_wrapper'
> 'distutils-r1_run_phase' 'python_compile'
>  *   environment, line 2798:  Called _multibuild_run
> '_multibuild_parallel' '_python_multibuild_wrapper'
> 'distutils-r1_run_phase' 'python_compile'
>  *   environment, line 2796:  Called _multibuild_parallel
> '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_compile'
>  *   environment, line 2846:  Called _python_multibuild_wrapper
> 'distutils-r1_run_phase' 'python_compile'
>  *   environment, line  914:  Called distutils-r1_run_phase 'python_compile'
>  *   environment, line 1412:  Called python_compile
>  *   environment, line 3315:  Called distutils-r1_python_compile
> 'config_fc' '--noopt' '--noarch'
>  *   environment, line 1292:  Called esetup.py 'build' 'config_fc'
> '--noopt' '--noarch'
>  *   environment, line 1862:  Called die
>  * The specific snippet of code:
>  *       "${@}" || die
>  *
>  * If you need support, post the output of `emerge --info
> '=sci-libs/scipy-0.14.0::gentoo'`,
>  * the complete build log and the output of `emerge -pqv
> '=sci-libs/scipy-0.14.0::gentoo'`.
>  * The complete build log is located at
> '/var/tmp/portage/sci-libs/scipy-0.14.0/temp/build.log'.
>  * The ebuild environment file is located at
> '/var/tmp/portage/sci-libs/scipy-0.14.0/temp/environment'.
>  * Working directory:
> '/var/tmp/portage/sci-libs/scipy-0.14.0/work/scipy-0.14.0-python3_3'
>  * S: '/var/tmp/portage/sci-libs/scipy-0.14.0/work/scipy-0.14.0'
> /usr/lib64/portage/bin/isolated-functions.sh: line 226: kill: (6675) -
> No such process
>
> >>> Failed to emerge sci-libs/scipy-0.14.0, Log file:
>
>
>
>
>