Gentoo Archives: gentoo-science

From: "Bastian Löffler" <Bastian_Loeffler@×××××.de>
To: gentoo-science@l.g.o
Subject: [gentoo-science] Trouble building scipy-0.14.0 against acml
Date: Mon, 09 Jun 2014 11:25:11
Message-Id: 53959991.80708@arcor.de
1 Hi all,
2
3 I can not build scipy 0.14.0 agaonst the currenct aclm since it
4 complains a missing blas:
5
6 numpy.distutils.system_info.BlasNotFoundError:
7 Blas (http://www.netlib.org/blas/) libraries not found.
8 Directories to search for the libraries can be specified in the
9 numpy/distutils/site.cfg file (section [blas]) or by setting
10 the BLAS environment variable.
11 * ERROR: sci-libs/scipy-0.14.0::gentoo failed (compile phase):
12 * (no error message)
13 *
14 * Call stack:
15 * ebuild.sh, line 93: Called src_compile
16 * environment, line 4075: Called distutils-r1_src_compile
17 * environment, line 1421: Called _distutils-r1_run_foreach_impl
18 'python_compile'
19 * environment, line 312: Called python_parallel_foreach_impl
20 'distutils-r1_run_phase' 'python_compile'
21 * environment, line 3808: Called multibuild_parallel_foreach_variant
22 '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_compile'
23 * environment, line 2855: Called multibuild_foreach_variant
24 '_multibuild_parallel' '_python_multibuild_wrapper'
25 'distutils-r1_run_phase' 'python_compile'
26 * environment, line 2798: Called _multibuild_run
27 '_multibuild_parallel' '_python_multibuild_wrapper'
28 'distutils-r1_run_phase' 'python_compile'
29 * environment, line 2796: Called _multibuild_parallel
30 '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_compile'
31 * environment, line 2846: Called _python_multibuild_wrapper
32 'distutils-r1_run_phase' 'python_compile'
33 * environment, line 914: Called distutils-r1_run_phase 'python_compile'
34 * environment, line 1412: Called python_compile
35 * environment, line 3315: Called distutils-r1_python_compile
36 'config_fc' '--noopt' '--noarch'
37 * environment, line 1292: Called esetup.py 'build' 'config_fc'
38 '--noopt' '--noarch'
39 * environment, line 1862: Called die
40 * The specific snippet of code:
41 * "${@}" || die
42 *
43 * If you need support, post the output of `emerge --info
44 '=sci-libs/scipy-0.14.0::gentoo'`,
45 * the complete build log and the output of `emerge -pqv
46 '=sci-libs/scipy-0.14.0::gentoo'`.
47 * The complete build log is located at
48 '/var/tmp/portage/sci-libs/scipy-0.14.0/temp/build.log'.
49 * The ebuild environment file is located at
50 '/var/tmp/portage/sci-libs/scipy-0.14.0/temp/environment'.
51 * Working directory:
52 '/var/tmp/portage/sci-libs/scipy-0.14.0/work/scipy-0.14.0-python2_7'
53 * S: '/var/tmp/portage/sci-libs/scipy-0.14.0/work/scipy-0.14.0'
54 /usr/lib64/portage/bin/isolated-functions.sh: line 226: kill: (6675) -
55 No such process
56 blas_opt_info:
57 system_info:
58 NOT AVAILABLE
59
60 blas_info:
61 libraries not found in ['/usr/lib64']
62 NOT AVAILABLE
63
64 blas_src_info:
65 NOT AVAILABLE
66
67 /usr/lib64/python3.3/distutils/dist.py:258: UserWarning: Unknown
68 distribution option: 'test_suite'
69 warnings.warn(msg)
70 /usr/lib64/python3.3/site-packages/numpy/distutils/system_info.py:1511:
71 UserWarning:
72 Atlas (http://math-atlas.sourceforge.net/) libraries not found.
73 Directories to search for the libraries can be specified in the
74 numpy/distutils/site.cfg file (section [atlas]) or by setting
75 the ATLAS environment variable.
76 warnings.warn(AtlasNotFoundError.__doc__)
77 /usr/lib64/python3.3/site-packages/numpy/distutils/system_info.py:566:
78 UserWarning: Specified path is invalid.
79 warnings.warn('Specified path %s is invalid.' % d)
80 /usr/lib64/python3.3/site-packages/numpy/distutils/system_info.py:1520:
81 UserWarning:
82 Blas (http://www.netlib.org/blas/) libraries not found.
83 Directories to search for the libraries can be specified in the
84 numpy/distutils/site.cfg file (section [blas]) or by setting
85 the BLAS environment variable.
86 warnings.warn(BlasNotFoundError.__doc__)
87 /usr/lib64/python3.3/site-packages/numpy/distutils/system_info.py:1523:
88 UserWarning:
89 Blas (http://www.netlib.org/blas/) sources not found.
90 Directories to search for the sources can be specified in the
91 numpy/distutils/site.cfg file (section [blas_src]) or by setting
92 the BLAS_SRC environment variable.
93 warnings.warn(BlasSrcNotFoundError.__doc__)
94 Traceback (most recent call last):
95 File "setup.py", line 237, in <module>
96 setup_package()
97 File "setup.py", line 234, in setup_package
98 setup(**metadata)
99 File "/usr/lib64/python3.3/site-packages/numpy/distutils/core.py",
100 line 135, in setup
101 config = configuration()
102 File "setup.py", line 173, in configuration
103 config.add_subpackage('scipy')
104 File
105 "/usr/lib64/python3.3/site-packages/numpy/distutils/misc_util.py", line
106 966, in add_subpackage
107 caller_level = 2)
108 File
109 "/usr/lib64/python3.3/site-packages/numpy/distutils/misc_util.py", line
110 935, in get_subpackage
111 caller_level = caller_level + 1)
112 File
113 "/usr/lib64/python3.3/site-packages/numpy/distutils/misc_util.py", line
114 872, in _get_configuration_from_setup_py
115 config = setup_module.configuration(*args)
116 File "scipy/setup.py", line 12, in configuration
117 config.add_subpackage('integrate')
118 File
119 "/usr/lib64/python3.3/site-packages/numpy/distutils/misc_util.py", line
120 966, in add_subpackage
121 caller_level = 2)
122 File
123 "/usr/lib64/python3.3/site-packages/numpy/distutils/misc_util.py", line
124 935, in get_subpackage
125 caller_level = caller_level + 1)
126 File
127 "/usr/lib64/python3.3/site-packages/numpy/distutils/misc_util.py", line
128 872, in _get_configuration_from_setup_py
129 config = setup_module.configuration(*args)
130 File "scipy/integrate/setup.py", line 12, in configuration
131 blas_opt = get_info('blas_opt',notfound_action=2)
132 File
133 "/usr/lib64/python3.3/site-packages/numpy/distutils/system_info.py",
134 line 340, in get_info
135 return cl().get_info(notfound_action)
136 File
137 "/usr/lib64/python3.3/site-packages/numpy/distutils/system_info.py",
138 line 499, in get_info
139 raise self.notfounderror(self.notfounderror.__doc__)
140 numpy.distutils.system_info.BlasNotFoundError:
141 Blas (http://www.netlib.org/blas/) libraries not found.
142 Directories to search for the libraries can be specified in the
143 numpy/distutils/site.cfg file (section [blas]) or by setting
144 the BLAS environment variable.
145 * ERROR: sci-libs/scipy-0.14.0::gentoo failed (compile phase):
146 * (no error message)
147 *
148 * Call stack:
149 * ebuild.sh, line 93: Called src_compile
150 * environment, line 4075: Called distutils-r1_src_compile
151 * environment, line 1421: Called _distutils-r1_run_foreach_impl
152 'python_compile'
153 * environment, line 312: Called python_parallel_foreach_impl
154 'distutils-r1_run_phase' 'python_compile'
155 * environment, line 3808: Called multibuild_parallel_foreach_variant
156 '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_compile'
157 * environment, line 2855: Called multibuild_foreach_variant
158 '_multibuild_parallel' '_python_multibuild_wrapper'
159 'distutils-r1_run_phase' 'python_compile'
160 * environment, line 2798: Called _multibuild_run
161 '_multibuild_parallel' '_python_multibuild_wrapper'
162 'distutils-r1_run_phase' 'python_compile'
163 * environment, line 2796: Called _multibuild_parallel
164 '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_compile'
165 * environment, line 2846: Called _python_multibuild_wrapper
166 'distutils-r1_run_phase' 'python_compile'
167 * environment, line 914: Called distutils-r1_run_phase 'python_compile'
168 * environment, line 1412: Called python_compile
169 * environment, line 3315: Called distutils-r1_python_compile
170 'config_fc' '--noopt' '--noarch'
171 * environment, line 1292: Called esetup.py 'build' 'config_fc'
172 '--noopt' '--noarch'
173 * environment, line 1862: Called die
174 * The specific snippet of code:
175 * "${@}" || die
176 *
177 * If you need support, post the output of `emerge --info
178 '=sci-libs/scipy-0.14.0::gentoo'`,
179 * the complete build log and the output of `emerge -pqv
180 '=sci-libs/scipy-0.14.0::gentoo'`.
181 * The complete build log is located at
182 '/var/tmp/portage/sci-libs/scipy-0.14.0/temp/build.log'.
183 * The ebuild environment file is located at
184 '/var/tmp/portage/sci-libs/scipy-0.14.0/temp/environment'.
185 * Working directory:
186 '/var/tmp/portage/sci-libs/scipy-0.14.0/work/scipy-0.14.0-python3_3'
187 * S: '/var/tmp/portage/sci-libs/scipy-0.14.0/work/scipy-0.14.0'
188 /usr/lib64/portage/bin/isolated-functions.sh: line 226: kill: (6675) -
189 No such process
190
191 >>> Failed to emerge sci-libs/scipy-0.14.0, Log file:

Replies

Subject Author
Re: [gentoo-science] Trouble building scipy-0.14.0 against acml "François Bissey" <frp.bissey@×××××.com>