| 1 |
No, no overlay here. In fact I avoid overlay at any cost. |
| 2 |
|
| 3 |
Thank you for a while!! |
| 4 |
|
| 5 |
|
| 6 |
On 11/19/2016 12:36 PM, Michael Palimaka wrote: |
| 7 |
> On 20/11/16 01:47, Zhu Sha Zang wrote: |
| 8 |
>> Hello everybody... |
| 9 |
>> |
| 10 |
>> |
| 11 |
>> A single doubt here: |
| 12 |
>> |
| 13 |
>> |
| 14 |
>> After an upgrade in package dev-libs/icu (from 57.1 to 58.1-r1) i tried |
| 15 |
>> a package upgrade inside R and got that: |
| 16 |
>> |
| 17 |
>> |
| 18 |
>> /> update.packages(checkBuilt=TRUE, ask=FALSE, |
| 19 |
>> repos='http://cran.us.r-project.org') |
| 20 |
>> trying URL 'http://cran.us.r-project.org/src/contrib/knitr_1.15.tar.gz' |
| 21 |
>> Content type 'application/x-gzip' length 1027358 bytes (1003 KB) |
| 22 |
>> ================================================== |
| 23 |
>> downloaded 1003 KB |
| 24 |
>> |
| 25 |
>> * installing *source* package ‘knitr’ ... |
| 26 |
>> ** package ‘knitr’ successfully unpacked and MD5 sums checked |
| 27 |
>> ** R |
| 28 |
>> ** demo |
| 29 |
>> ** inst |
| 30 |
>> ** preparing package for lazy loading |
| 31 |
>> Error in dyn.load(file, DLLpath = DLLpath, ...) : |
| 32 |
>> *unable to load shared object |
| 33 |
>> '/usr/lib64/R/library/stringi/libs/stringi.so':** |
| 34 |
>> ** libicui18n.so.57: cannot open shared object file: No such file or |
| 35 |
>> directory* |
| 36 |
>> Error : unable to load R code in package ‘knitr’ |
| 37 |
>> ERROR: lazy loading failed for package ‘knitr’ |
| 38 |
>> * removing ‘/usr/lib64/R/library/knitr’ |
| 39 |
>> * restoring previous ‘/usr/lib64/R/library/knitr’ |
| 40 |
>> |
| 41 |
>> The downloaded source packages are in |
| 42 |
>> ‘/tmp/RtmpKBphr0/downloaded_packages’ |
| 43 |
>> Updating HTML index of packages in '.Library' |
| 44 |
>> Making 'packages.html' ... done |
| 45 |
>> Warning message: |
| 46 |
>> In install.packages(update[instlib == l, "Package"], l, contriburl = |
| 47 |
>> contriburl, : |
| 48 |
>> installation of package ‘knitr’ had non-zero exit status |
| 49 |
>> / |
| 50 |
>> |
| 51 |
>> |
| 52 |
>> This kind of "bug" can I put inside bugs.gentoo.org or its a cran |
| 53 |
>> package bug? |
| 54 |
>> |
| 55 |
>> It is not the first time and i'm in dout about how to proceed. |
| 56 |
>> |
| 57 |
>> |
| 58 |
>> Thanks anyway. |
| 59 |
>> |
| 60 |
>> Best regards!! |
| 61 |
>> |
| 62 |
>> // |
| 63 |
>> |
| 64 |
> Due to the dev-libs/icu upgrade, the package that provides |
| 65 |
> /usr/lib64/R/library/stringi/libs/stringi.so needs to be rebuilt. I |
| 66 |
> assume you're using the R overlay, so that would be sci-CRAN/stringi. |
| 67 |
> |
| 68 |
> It's possible for this rebuild to be achieved automatically in the |
| 69 |
> future, but it requires a minor modification to the stringi ebuild |
| 70 |
> (subslot operator to be added to dev-libs/icu dependency). As the R |
| 71 |
> overlay is automatically generated I'm not sure how to achieve this so |
| 72 |
> I've CCed Benda who I hope is the right person to look at this. :-) |
| 73 |
> |
| 74 |
> |
Archives